Gromacs - Spoken Tutorials - Assignments Funded by the MoE, Government of India. ---------------------------------------- For assignment activity, please do the following. 1. Extract few more parameters from the edr file with the energy command. 2. Create and view the graphs with a plotting program of your choice. 3. Open the em.gro file in VMD or another program of your choice. 4. Ascertain the protein molecule is seen as one unit in the box.