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Outline:Visit RCSB Protein Data Bank website. Download ligand and protein files from the RCSB database. Move the downloaded files to home folder. Open ADT interface using the terminal. Perform ligand refinement using AutoDockTools. Add hydrogens to the ligand structure. Save the structure as PDB file. Display root atom. Display allowed torsions in the ligand structure Save the refined ligand as pdbqt file.
Visit RCSB Protein Data Bank website. Download ligand and protein files from the RCSB database. Move the downloaded files to home folder. Open ADT interface using the terminal. Perform ligand refinement using AutoDockTools. Add hydrogens to the ligand structure. Save the structure as PDB file. Display root atom. Display allowed torsions in the ligand structure Save the refined ligand as pdbqt file.
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